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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015832408.1_cds_XP_016504885.1_18277
CDS Infomation

[gene=LOC107822828] [db_xref=GeneID:107822828] [protein=calcium permeable stress-gated cation channel 1-like] [protein_id=XP_016504885.1] [location=complement(join(1431..1688,2207..2440,2996..3320,4335..4580,4861..5201,6560..6640,6922..7041,7787..7888,8854..8989,9938..10084,10457..10770))] [gbkey=CDS]
Sequence

ATGGCGACACTTCAAGATATAGGCCTTTCAGCAGCAATAAATATTATATCTGCATTGATT
TTTCTTGTGGCATTTGCAATTCTGCGGCTCCAACCATTCAATGACAGAGTTTATTTCCCC
AAATGGTATCTTAAGGGGTTAAGGCACAGCCCAACCCACTCTGGGGCATTTGTCACAAAA
TTTGTTAATGTTGATTGGAGGGCGTATATAAGGTTCCTGAACTGGATACCAGATGCACTA
AAAATGCCCGAACCTGAGCTTATTGACCATGCGGGGTTGGACTCTGCCGTTTATTTGCGG
ATATACTTGCTAGGGCTGAAAATCTTTGTTCCTATAACATTGCTTGCATGGGCTATCCTG
GTACCTGTAAATTGGACAAATAGCACTCTGGCAAAGTCCAACTTTACTTACAGTGACATT
GATAAGCTTTCTATTTCAAACATTCCACTTGGATCACTCAGGTTTTGGACTCATATTGTT
ATGGCCTATGCCTTCACATTCTGGACCTGCTATGTCTTACAAACAGAGTATGCAAAAGTT
GCAGCCATGAGGTTACAGTTTGTCGCCTCTGAAAAACGTCGCCCTGATCAATATACGGTC
CTTGTTAGGAATGTTCCGCCTGATGCCGATGAATCAGTTAGTGAATGTGTGGAGCACTTT
TTCCTGGTTAACCATCAAGATCATTATCTCATGCATCAGGGTGTTTATGATGCCAATAAA
CTAGCAAAGCTGGTGAAGGAGAAGAAGGGTAAGCAAAATTGGCTCGACTATTACCAGCTT
AAGTACTCTAGAAATCAGTCAAAACGTCCTATGATGAAGACTGGTTTCCTTGGCTGCTTT
GGAGAAAAAGTAGATGCAATTGACCATCAGACTGCTGAAATTGAAAGATTGTCAGAAGAG
ATAGCTGAAGAGATACAAAGGGTGAGAAAGGACCCAAAATCTATCATGCCTGCGGCTTTT
GTCTCCTTCAAAACACGGTGGGGTGCCGCTGTTTGTGCACAAACACAGCAATCCAGAAAT
CCAACCATGTGGTTAACAGAATGGGCTCCAGAGCCACGTGATGTATTTTGGAACAACCTG
GCGATTCCCTATGTTTCTTTGACAATTAGGAGGCTCATAATTGCTGTTGTCTTCTTTTTT
CTGACATTCTTCTTCATGATTCCAATTGCATTTGTCCAAACCCTTGCCAGTATTGAGGGG
ATTAGGAAGAGAGCACCATTCCTAAAAGTTATCATTGACGAACCTTTCATCAAGTCATTC
ATCCAAGGATTTCTACCTGGGATTGCTTTGAAGATCTTTCTCATATTTCTGCCGACTATA
TTGATGATTATGTCCAAATTTGAAGGCTGGCTTAGCATTTCAGCTCTAGAGAGGAAGTCT
GCATCTAAATACTACATCTTCACTATTGTGAATGTGTTCCTCGGGAACATAATTGCAGGA
GCTGCATTTGAACAACTAAATGCCTTTCTCAATCAGTCAGCAAACCAAATCCCTAAAACA
ATTGGTGTCGCAGTCCCTATGAAAGCATCTTTCTTCATAACCTACATAATGGTTGACGGG
TGGGCTGGTATTGCTGGAGAGATCCTAAGGCTGAAGCCACTTATATTTTACCACTTGAAG
AACTTTTTCTTGGTAAAAACAGAAAAAGATAGAGAAGAGGCAATGGATCCTGGAAGTGTT
GGTTTCAACACAGGAGAGCCACAGATACAATTATATTTCTTATTGGGGCTTGTCTATGCT
GTGGTCACACCATTTCTGCTTCCCTTCATTTTGGTCTTCTTTGGCCTGGCATATGTAGTA
TATCGTCATCAGATTATAAATGTGTATAATCAGGAGTATGAAAGTGCAGCAGCATTCTGG
CCAGATGTTCATGGACGTATAATTTTTGCTCTGTGCTTCTCTCAATTATCTCTACTGGGC
TTGCTAAGTACAAAACATGCTGCTCAGTCAGCCCCTTTCCTGATTGCCCTTCCAGTACTG
ACCATCTCATTTCACTTATTCTGCAAAGGACGTTATGAGCCAGCTTTCACCAAATATCCT
ATACAGGAAGCAAGGATGAGAGATACTTTGGAACAAGCAAGAGAACCGAACTTTAATCTG
AAAGGCTACCTTCAAAATGCTTATGTGCATCCTGTTTTCAAAGGTGACGATGAGGACGAA
GATGAGGACTTCATGAACAAACTGGAGACTGATAGCGTGATTGTCCCCACAAAACGCCAT
TCAAGATTAAATACACCAGTGCCCAGCAAAGTCAGCGCTGGCTCGTCTCCATCACTTCCT
GATGCAGTTATTCATGAACATTAA

Peptide Sequence

PEP ID

XP_016504885.1
PEP Infomation

PREDICTED: calcium permeable stress-gated cation channel 1-like [Nicotiana tabacum]
Sequence

MATLQDIGLSAAINIISALIFLVAFAILRLQPFNDRVYFPKWYLKGLRHSPTHSGAFVTK
FVNVDWRAYIRFLNWIPDALKMPEPELIDHAGLDSAVYLRIYLLGLKIFVPITLLAWAIL
VPVNWTNSTLAKSNFTYSDIDKLSISNIPLGSLRFWTHIVMAYAFTFWTCYVLQTEYAKV
AAMRLQFVASEKRRPDQYTVLVRNVPPDADESVSECVEHFFLVNHQDHYLMHQGVYDANK
LAKLVKEKKGKQNWLDYYQLKYSRNQSKRPMMKTGFLGCFGEKVDAIDHQTAEIERLSEE
IAEEIQRVRKDPKSIMPAAFVSFKTRWGAAVCAQTQQSRNPTMWLTEWAPEPRDVFWNNL
AIPYVSLTIRRLIIAVVFFFLTFFFMIPIAFVQTLASIEGIRKRAPFLKVIIDEPFIKSF
IQGFLPGIALKIFLIFLPTILMIMSKFEGWLSISALERKSASKYYIFTIVNVFLGNIIAG
AAFEQLNAFLNQSANQIPKTIGVAVPMKASFFITYIMVDGWAGIAGEILRLKPLIFYHLK
NFFLVKTEKDREEAMDPGSVGFNTGEPQIQLYFLLGLVYAVVTPFLLPFILVFFGLAYVV
YRHQIINVYNQEYESAAAFWPDVHGRIIFALCFSQLSLLGLLSTKHAAQSAPFLIALPVL
TISFHLFCKGRYEPAFTKYPIQEARMRDTLEQAREPNFNLKGYLQNAYVHPVFKGDDEDE
DEDFMNKLETDSVIVPTKRHSRLNTPVPSKVSAGSSPSLPDAVIHEH

Transcript Sequence

Gene sequence data has not been registered.